Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01532.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3066
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28


Found at i:1383 original size:5 final size:5

Alignment explanation


    Indices: 1373--1405  Score: 57
    Period size: 5  Copynumber: 6.4  Consensus size: 5

       1363 TAAGAATTTA

                                                   
       1373 CACGC CACGC CACGC CACGC CACGC CAGCGC CA
          1 CACGC CACGC CACGC CACGC CACGC CA-CGC CA

       1406 GTCTTACTGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5   22  0.81
   6    5  0.19

ACGTcount: A:0.21, C:0.58, G:0.21, T:0.00


Consensus pattern (5 bp):   
CACGC

Done.