Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01537.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3163
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31


Found at i:3000 original size:12 final size:11

Alignment explanation


    Indices: 2956--3009  Score: 54
    Period size: 12  Copynumber: 4.6  Consensus size: 11

       2946 TATCTAATAT

                        
       2956 TTGAAATGGAAA
          1 TTGAAAT-GAAA

            *   *      
       2968 ATGATATGAAA
          1 TTGAAATGAAA

                 *     
       2979 TTGAAGTGAAA
          1 TTGAAATGAAA

                        
       2990 TGTGAAATGAAA
          1 T-TGAAATGAAA

                    
       3002 TATGAAAT
          1 T-TGAAAT

       3010 TGTGGAATGA


Statistics
Matches: 34,  Mismatches: 7, Indels: 2
        0.79            0.16        0.05

Matches are distributed among these distances:
  11   13  0.38
  12   21  0.62

ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28


Consensus pattern (11 bp):   
TTGAAATGAAA
Done.