Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01543.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 592

Length: 988
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.36


Found at i:225 original size:75 final size:75

Alignment explanation


    Indices: 102--248  Score: 267
    Period size: 75  Copynumber: 2.0  Consensus size: 75

         92 GCATCGAACG

                                       *                                     
        102 AGCGATCGAGCGCTTTACGATTTGGTATGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
          1 AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT

                      
        167 CCTACTAGAA
         66 CCTACTAGAA

                        *                     *                              
        177 AGCGATCGAGCGTTTTACGATTTGGTACGCGCGATTTTTCCAGTTTTAATTTAACTCTTGAAAAT
          1 AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT

                   
        242 CCTACTA
         66 CCTACTA

        249 TAAATTAAGA


Statistics
Matches: 69,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  75   69  1.00

ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36


Consensus pattern (75 bp):   
AGCGATCGAGCGCTTTACGATTTGGTACGCGCGAATTTTCCAGTTTTAATTTAACTCTTGAAAAT
CCTACTAGAA
Done.