Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01547.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3642
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31


Found at i:1208 original size:26 final size:26

Alignment explanation


    Indices: 1177--1227  Score: 75
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1167 CATTGAAGTT

                    *   *    *        
       1177 TGGTTTATCTTTTTACATGCATGAAG
          1 TGGTTTATATTTATACACGCATGAAG

                                     
       1203 TGGTTTATATTTATACACGCATGAA
          1 TGGTTTATATTTATACACGCATGAA

       1228 ATCATAAAGT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43


Consensus pattern (26 bp):   
TGGTTTATATTTATACACGCATGAAG
Done.