Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01558.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4928
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32


Found at i:287 original size:3 final size:3

Alignment explanation


    Indices: 274--323  Score: 91
    Period size: 3  Copynumber: 16.7  Consensus size: 3

        264 GATTAAATCA

                 *                                                         
        274 CTT CCT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT

              
        322 CT
          1 CT

        324 CTCGTTCTTT


Statistics
Matches: 45,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   45  1.00

ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64


Consensus pattern (3 bp):   
CTT

Done.