Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01561.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1733
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30


Found at i:45 original size:12 final size:12

Alignment explanation


    Indices: 28--52  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

         18 CTAACCATCA

                        
         28 CCCCCTTCACTC
          1 CCCCCTTCACTC

                        
         40 CCCCCTTCACTC
          1 CCCCCTTCACTC

             
         52 C
          1 C

         53 TCGGTGAACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.08, C:0.68, G:0.00, T:0.24


Consensus pattern (12 bp):   
CCCCCTTCACTC
Done.