Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01564.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5085
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31


Found at i:2280 original size:42 final size:42

Alignment explanation


    Indices: 2221--2308  Score: 167
    Period size: 42  Copynumber: 2.1  Consensus size: 42

       2211 CTTCCAAGCA

                                                      
       2221 AAAAGACATTACCTCAGTTCCTACTATGTGCCAGTAGTTTTG
          1 AAAAGACATTACCTCAGTTCCTACTATGTGCCAGTAGTTTTG

                                                *     
       2263 AAAAGACATTACCTCAGTTCCTACTATGTGCCAGTATTTTTG
          1 AAAAGACATTACCTCAGTTCCTACTATGTGCCAGTAGTTTTG

                
       2305 AAAA
          1 AAAA

       2309 AAGATTGTTG


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   45  1.00

ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33


Consensus pattern (42 bp):   
AAAAGACATTACCTCAGTTCCTACTATGTGCCAGTAGTTTTG
Done.