Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g01600.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747
Length: 1246
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:986 original size:70 final size:70
Alignment explanation
Indices: 873--1013 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
863 CAAGCTGGGG
873 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
1 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
938 TAGTT
66 TAGTT
943 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
1 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
1008 TAGTT
66 TAGTT
1013 A
1 A
1014 AAAGTCTTAC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (70 bp):
ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
TAGTT
Found at i:1137 original size:6 final size:6
Alignment explanation
Indices: 1121--1151 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
1111 CCTCCAAAGC
1121 TTCTGGT TTCTGT TTCTGT TTCTGT TTCTGT
1 TTCT-GT TTCTGT TTCTGT TTCTGT TTCTGT
1152 CTAGTCGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.00, C:0.16, G:0.19, T:0.65
Consensus pattern (6 bp):
TTCTGT
Done.