Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g01600.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714
Length: 1191
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Found at i:931 original size:70 final size:70
Alignment explanation
Indices: 818--958 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
808 CAAGCTGGGG
818 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
1 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
883 TAGTT
66 TAGTT
888 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
1 ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
953 TAGTT
66 TAGTT
958 A
1 A
959 AAAGTCTTAC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (70 bp):
ATAAGCGGTGGTTTAAAGGAGCTAGAAAGTTTGTGGAGAGTGCTGCAAATTCCTTCAGTGTTGCT
TAGTT
Found at i:1082 original size:6 final size:6
Alignment explanation
Indices: 1066--1096 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
1056 CCTCCAAAGC
1066 TTCTGGT TTCTGT TTCTGT TTCTGT TTCTGT
1 TTCT-GT TTCTGT TTCTGT TTCTGT TTCTGT
1097 CTAGTCGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.00, C:0.16, G:0.19, T:0.65
Consensus pattern (6 bp):
TTCTGT
Done.