Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01603.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1777
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36


Found at i:74 original size:20 final size:18

Alignment explanation


    Indices: 27--78  Score: 59
    Period size: 20  Copynumber: 2.7  Consensus size: 18

         17 AAAAACCCCT

                                
         27 TTCTCTTCTCTTCTTTTCTC
          1 TTCTCTT-TC-TCTTTTCTC

               *              
         47 TTCCCTTTCTCTTTTCTC
          1 TTCTCTTTCTCTTTTCTC

                          
         65 TCCTCTCTTTCTCT
          1 T--TCTCTTTCTCT

         79 CTCTGTATGT


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  18   10  0.36
  19    2  0.07
  20   16  0.57

ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62


Consensus pattern (18 bp):   
TTCTCTTTCTCTTTTCTC
Done.