Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01619.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1772
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27


Found at i:367 original size:9 final size:9

Alignment explanation


    Indices: 353--403  Score: 57
    Period size: 9  Copynumber: 5.7  Consensus size: 9

        343 GAGGAAATGT

                     
        353 AGAGGAACA
          1 AGAGGAACA

                  *  
        362 AGAGGATCA
          1 AGAGGAACA

            *        
        371 CGAGGAACA
          1 AGAGGAACA

            *    *   
        380 GGAGGTACA
          1 AGAGGAACA

               *     
        389 AGATGAACA
          1 AGAGGAACA

                  
        398 AGAGGA
          1 AGAGGA

        404 GCAGCATGAA


Statistics
Matches: 33,  Mismatches: 9, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
   9   33  1.00

ACGTcount: A:0.47, C:0.12, G:0.35, T:0.06


Consensus pattern (9 bp):   
AGAGGAACA

Done.