Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01628.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 439

Length: 733
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34


Found at i:574 original size:13 final size:13

Alignment explanation


    Indices: 556--582  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        546 CCTCCAAAGC

                         
        556 TTGTAATAGTTTA
          1 TTGTAATAGTTTA

                         
        569 TTGTAATAGTTTA
          1 TTGTAATAGTTTA

             
        582 T
          1 T

        583 AGGCACTGCG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56


Consensus pattern (13 bp):   
TTGTAATAGTTTA
Done.