Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02548.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34


Found at i:91 original size:6 final size:6

Alignment explanation


    Indices: 80--110  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

         70 TGAATACTCC

                                     *          
         80 CTTCAT CTTCAT CTTCAT CTTCTT CTTCAT C
          1 CTTCAT CTTCAT CTTCAT CTTCAT CTTCAT C

        111 CTTTTCCTCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.13, C:0.35, G:0.00, T:0.52


Consensus pattern (6 bp):   
CTTCAT

Done.