Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01639.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1260
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21


Found at i:1064 original size:9 final size:9

Alignment explanation


    Indices: 1023--1066  Score: 61
    Period size: 9  Copynumber: 4.9  Consensus size: 9

       1013 AGAGTCAAAG

                   * 
       1023 AAGAAGGGA
          1 AAGAAGGAA

                 *   
       1032 AAGAAAGAA
          1 AAGAAGGAA

                 *   
       1041 AAGAAAGAA
          1 AAGAAGGAA

                     
       1050 AAGAAGGAA
          1 AAGAAGGAA

                    
       1059 AAGAAGGA
          1 AAGAAGGA

       1067 TGATGGAACG


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   32  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (9 bp):   
AAGAAGGAA
Done.