Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga10g01654.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3924
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:2924 original size:157 final size:157
Alignment explanation
Indices: 2714--3026 Score: 572
Period size: 157 Copynumber: 2.0 Consensus size: 157
2704 GTTTTTGGAA
* *
2714 ATGACATTGCAATGATCTGGACTTTTGTTTGCCTTCAAAAGCATTGAATTGAGATGCAAGCATGT
1 ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
*
2779 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATTTGGTAATTGTCGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
*
2844 TTTAGTTTGGTTAGATGTTCTCTTTAG
131 TTTAGTTTGGTTAGACGTTCTCTTTAG
*
2871 ATGACATTGCAATGTTCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
1 ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
*
2936 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTTGTATCATTCTCTGCATCA
66 TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
3001 TTTAGTTTGGTTAGACGTTCTCTTTA
131 TTTAGTTTGGTTAGACGTTCTCTTTA
3027 TATTACTCAA
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 150 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (157 bp):
ATGACATTGCAATGATCTGGACTTCTGTTTGCCTTCAAAAGCATTGAACTGAGATGCAAGCATGT
TCTTTGAGGAAATATTTGTGAATGAAGCAAATTATGTGGTAATTGTCGTATCATTCTCTGCATCA
TTTAGTTTGGTTAGACGTTCTCTTTAG
Done.