Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02551.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1535
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28


Found at i:47 original size:16 final size:16

Alignment explanation


    Indices: 26--65  Score: 80
    Period size: 16  Copynumber: 2.5  Consensus size: 16

         16 TCAAAACCTC

                            
         26 GACATAGCATCGCGCG
          1 GACATAGCATCGCGCG

                            
         42 GACATAGCATCGCGCG
          1 GACATAGCATCGCGCG

                    
         58 GACATAGC
          1 GACATAGC

         66 GCAAAACCTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   24  1.00

ACGTcount: A:0.28, C:0.30, G:0.30, T:0.12


Consensus pattern (16 bp):   
GACATAGCATCGCGCG

Found at i:193 original size:6 final size:6

Alignment explanation


    Indices: 175--210  Score: 54
    Period size: 6  Copynumber: 6.0  Consensus size: 6

        165 GTGAAGAAAA

                     *              *                
        175 ATAAAG ATGAAG ATAAAG ATACAG ATAAAG ATAAAG
          1 ATAAAG ATAAAG ATAAAG ATAAAG ATAAAG ATAAAG

        211 GCTATCGTGA


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.61, C:0.03, G:0.19, T:0.17


Consensus pattern (6 bp):   
ATAAAG
Done.