Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02553.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 211
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38


Found at i:161 original size:13 final size:14

Alignment explanation


    Indices: 143--171  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

        133 TTTATTTGTC

                          
        143 TAGGCCTAT-TTTT
          1 TAGGCCTATATTTT

                          
        156 TAGGCCTATATTTT
          1 TAGGCCTATATTTT

              
        170 TA
          1 TA

        172 TTTAAATATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.60
  14    6  0.40

ACGTcount: A:0.21, C:0.14, G:0.14, T:0.52


Consensus pattern (14 bp):   
TAGGCCTATATTTT
Done.