Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01664.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 841

Length: 1402
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:356 original size:3 final size:3

Alignment explanation


    Indices: 348--374  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        338 AACCCGATAA

                                               
        348 AAG AAG AAG AAG AAG AAG AAG AAG AAG
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG

        375 TTAGAATGAG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
AAG

Found at i:1382 original size:18 final size:18

Alignment explanation


    Indices: 1359--1402  Score: 79
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       1349 GCTGTATTTC

                             *
       1359 GACTTGCTGTTAGTAAAG
          1 GACTTGCTGTTAGTAAAA

                              
       1377 GACTTGCTGTTAGTAAAA
          1 GACTTGCTGTTAGTAAAA

                    
       1395 GACTTGCT
          1 GACTTGCT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   25  1.00

ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34


Consensus pattern (18 bp):   
GACTTGCTGTTAGTAAAA
Done.