Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01666.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27


Found at i:879 original size:132 final size:132

Alignment explanation


    Indices: 642--892  Score: 371
    Period size: 132  Copynumber: 1.9  Consensus size: 132

        632 CAAGAAAGTG

                                           *                           *     
        642 AAAGGATCTCTTCCTGATAACTTCTTTGATAGGGATGAAACCAAGTTACCTACGAATCTTATGAA
          1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAATCTCATGAA

                                *      *                                     
        707 GCCTCCAAGGGAGAATAAACTGGCAGTGAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
         66 GCCTCCAAGGGAGAATAAACAGGCAGTCAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG

              
        772 TT
        131 TT

                              *                   **            *            
        774 AAAGGATCTCTTCCTGATGACTTCTTTGATAAGGATGATGCCAAGTTACCTATGAATGC-CATGA
          1 AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAAT-CTCATGA

                   *          *       *                             
        838 AGCCTCCTAGGGAGAATATACAGGC-TTCAGAGCAGGCTAGTGCTCCAGAAACCAA
         65 AGCCTCCAAGGGAGAATAAACAGGCAGTCA-AGCAGGCTAGTGCTCCAGAAACCAA

        893 GCAAGTAAAG


Statistics
Matches: 106,  Mismatches: 11, Indels: 4
        0.88            0.09        0.03

Matches are distributed among these distances:
 131    2  0.02
 132  103  0.97
 133    1  0.01

ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23


Consensus pattern (132 bp):   
AAAGGATCTCTTCCTGATAACTTCTTTGATAAGGATGAAACCAAGTTACCTACGAATCTCATGAA
GCCTCCAAGGGAGAATAAACAGGCAGTCAAGCAGGCTAGTGCTCCAGAAACCAAAACAAAGCACG
TT
Done.