Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01667.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5384
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:3654 original size:12 final size:12

Alignment explanation


    Indices: 3637--3677  Score: 52
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       3627 GGAGATAGGA

                        
       3637 AAAACAGGTTCC
          1 AAAACAGGTTCC

                       *
       3649 AAAACAGG---A
          1 AAAACAGGTTCC

                        
       3658 AAAACAGGTTCC
          1 AAAACAGGTTCC

                    
       3670 AAAACAGG
          1 AAAACAGG

       3678 AATAACAGTG


Statistics
Matches: 24,  Mismatches: 2, Indels: 6
        0.75            0.06        0.19

Matches are distributed among these distances:
   9    8  0.33
  12   16  0.67

ACGTcount: A:0.51, C:0.20, G:0.20, T:0.10


Consensus pattern (12 bp):   
AAAACAGGTTCC

Found at i:3658 original size:21 final size:21

Alignment explanation


    Indices: 3633--3685  Score: 97
    Period size: 21  Copynumber: 2.5  Consensus size: 21

       3623 CAGTGGAGAT

                                 
       3633 AGGAAAAACAGGTTCCAAAAC
          1 AGGAAAAACAGGTTCCAAAAC

                                 
       3654 AGGAAAAACAGGTTCCAAAAC
          1 AGGAAAAACAGGTTCCAAAAC

                 *     
       3675 AGGAATAACAG
          1 AGGAAAAACAG

       3686 TGGCTGTAGG


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.53, C:0.17, G:0.21, T:0.09


Consensus pattern (21 bp):   
AGGAAAAACAGGTTCCAAAAC
Done.