Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01668.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3660
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2481 original size:16 final size:16

Alignment explanation


    Indices: 2462--2493  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2452 TTATTTGTCA

                            
       2462 GTTGTTGTCATAAGCC
          1 GTTGTTGTCATAAGCC

                            
       2478 GTTGTTGTCATAAGCC
          1 GTTGTTGTCATAAGCC

       2494 TTTACCAAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38


Consensus pattern (16 bp):   
GTTGTTGTCATAAGCC
Done.