Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02554.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4230
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:2176 original size:4 final size:4

Alignment explanation


    Indices: 2159--2219  Score: 95
    Period size: 4  Copynumber: 15.0  Consensus size: 4

       2149 TCTTTTTCTG

                       *                                                
       2159 GTAT GTAT ATTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
          1 GTAT GTAT -GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT

              *           
       2208 GTGT GTAT GTAT
          1 GTAT GTAT GTAT

       2220 ATGTTAATTG


Statistics
Matches: 52,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
   4   49  0.94
   5    3  0.06

ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51


Consensus pattern (4 bp):   
GTAT

Done.