Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01673.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3344
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:49 original size:6 final size:6

Alignment explanation


    Indices: 35--64  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

         25 ACCGCTGTCG

                *                             
         35 TGCCGC TGCCTC TGCCTC TGCCTC TGCCTC
          1 TGCCTC TGCCTC TGCCTC TGCCTC TGCCTC

         65 CACACCTTCC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.00, C:0.50, G:0.20, T:0.30


Consensus pattern (6 bp):   
TGCCTC

Done.