Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01676.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3379
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33


Found at i:635 original size:6 final size:6

Alignment explanation


    Indices: 621--659  Score: 60
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        611 TGTATTCTCG

                *                           *            
        621 CAAGTA CAAGCA CAAGCA CAAGCA CAAGTA CAAGCA CAA
          1 CAAGCA CAAGCA CAAGCA CAAGCA CAAGCA CAAGCA CAA

        660 CTTAGTGCTG


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.51, C:0.28, G:0.15, T:0.05


Consensus pattern (6 bp):   
CAAGCA

Found at i:641 original size:12 final size:12

Alignment explanation


    Indices: 621--659  Score: 69
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        611 TGTATTCTCG

                        
        621 CAAGTACAAGCA
          1 CAAGTACAAGCA

                *       
        633 CAAGCACAAGCA
          1 CAAGTACAAGCA

                        
        645 CAAGTACAAGCA
          1 CAAGTACAAGCA

               
        657 CAA
          1 CAA

        660 CTTAGTGCTG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.51, C:0.28, G:0.15, T:0.05


Consensus pattern (12 bp):   
CAAGTACAAGCA

Done.