Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01676.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2176
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:284 original size:6 final size:6

Alignment explanation


    Indices: 270--308  Score: 60
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        260 TGTATTCTCG

                *                           *            
        270 CAAGTA CAAGCA CAAGCA CAAGCA CAAGTA CAAGCA CAA
          1 CAAGCA CAAGCA CAAGCA CAAGCA CAAGCA CAAGCA CAA

        309 CTTAGTGCTG


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.51, C:0.28, G:0.15, T:0.05


Consensus pattern (6 bp):   
CAAGCA

Found at i:290 original size:12 final size:12

Alignment explanation


    Indices: 270--308  Score: 69
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        260 TGTATTCTCG

                        
        270 CAAGTACAAGCA
          1 CAAGTACAAGCA

                *       
        282 CAAGCACAAGCA
          1 CAAGTACAAGCA

                        
        294 CAAGTACAAGCA
          1 CAAGTACAAGCA

               
        306 CAA
          1 CAA

        309 CTTAGTGCTG


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.51, C:0.28, G:0.15, T:0.05


Consensus pattern (12 bp):   
CAAGTACAAGCA

Done.