Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01720.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1046
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27


Found at i:410 original size:27 final size:27

Alignment explanation


    Indices: 380--434  Score: 101
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        370 CCCCTACAAT

                              *        
        380 TTCCCCTTCTGAGTCTCTGGCTAAAAC
          1 TTCCCCTTCTGAGTCTCTAGCTAAAAC

                                       
        407 TTCCCCTTCTGAGTCTCTAGCTAAAAC
          1 TTCCCCTTCTGAGTCTCTAGCTAAAAC

             
        434 T
          1 T

        435 ACTATTATAG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.20, C:0.33, G:0.13, T:0.35


Consensus pattern (27 bp):   
TTCCCCTTCTGAGTCTCTAGCTAAAAC
Done.