Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01729.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1306
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1005 original size:94 final size:94

Alignment explanation


    Indices: 844--1030  Score: 365
    Period size: 94  Copynumber: 2.0  Consensus size: 94

        834 CTTCAAATTC

                                                                             
        844 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
          1 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT

                                         
        909 TGTATGTATTTTAACCTATATAAGCTTAA
         66 TGTATGTATTTTAACCTATATAAGCTTAA

                                                 *                           
        938 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGTGCTCTAACCAATATGCATTTCTGGCCT
          1 CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT

                                        
       1003 TGTATGTATTTTAACCTATATAAGCTTA
         66 TGTATGTATTTTAACCTATATAAGCTTA

       1031 CTTTATTTTT


Statistics
Matches: 92,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  94   92  1.00

ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43


Consensus pattern (94 bp):   
CTACCTCATTTCACCTTTTATTTAATACTATCTCTTGCGCTCTAACCAATATGCATTTCTGGCCT
TGTATGTATTTTAACCTATATAAGCTTAA
Done.