Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g02562.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1849
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:668 original size:38 final size:39

Alignment explanation


    Indices: 619--693  Score: 125
    Period size: 38  Copynumber: 1.9  Consensus size: 39

        609 TCCCTACTCA

                        *     *                    
        619 AATATTTTAGGAGATATTTACCTGTTACTTATAATTCAG
          1 AATATTTTAGGAAATATTCACCTGTTACTTATAATTCAG

                                                 
        658 AATA-TTTAGGAAATATTCACCTGTTACTTATAATTC
          1 AATATTTTAGGAAATATTCACCTGTTACTTATAATTC

        694 GAGGAGTATC


Statistics
Matches: 34,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  38   30  0.88
  39    4  0.12

ACGTcount: A:0.35, C:0.12, G:0.11, T:0.43


Consensus pattern (39 bp):   
AATATTTTAGGAAATATTCACCTGTTACTTATAATTCAG
Done.