Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01749.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3387
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:174 original size:21 final size:24

Alignment explanation


    Indices: 143--185  Score: 65
    Period size: 21  Copynumber: 1.9  Consensus size: 24

        133 CGATTAATAG

                                    
        143 GGGAGGGGAAGGA-A-TGGGAGAA
          1 GGGAGGGGAAGGAGACTGGGAGAA

                                  
        165 GGGA-GGGAAGGAGACTGGGAG
          1 GGGAGGGGAAGGAGACTGGGAG

        186 TGCAGTGGAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  21    8  0.42
  22    5  0.26
  23    6  0.32

ACGTcount: A:0.33, C:0.02, G:0.60, T:0.05


Consensus pattern (24 bp):   
GGGAGGGGAAGGAGACTGGGAGAA

Done.