Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01752.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 520

Length: 867
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29


Found at i:223 original size:3 final size:3

Alignment explanation


    Indices: 215--247  Score: 66
    Period size: 3  Copynumber: 11.0  Consensus size: 3

        205 CTCCACCAAT

                                                       
        215 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC
          1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC

        248 AAAAAGAAGA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAC

Done.