Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01769.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1828
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41


Found at i:1349 original size:40 final size:40

Alignment explanation


    Indices: 1181--1346  Score: 206
    Period size: 40  Copynumber: 4.2  Consensus size: 40

       1171 AAGGAGGAAG

                 *        *         *               
       1181 TACTGACAGTTTATTTGCAATACTAGTGGCTTGTCCACAA
          1 TACTGGCAGTTTATCTGCAATACTGGTGGCTTGTCCACAA

              *  *                 *                
       1221 TATTGACAGTTTATCTGCAATACGGGTGGCTTGTCCACAA
          1 TACTGGCAGTTTATCTGCAATACTGGTGGCTTGTCCACAA

                    *                      *     *  
       1261 TACTGGCAATTTATCTGCAATACTGGTGGCTAGTCCATAA
          1 TACTGGCAGTTTATCTGCAATACTGGTGGCTTGTCCACAA

              *   *       *              *   *      
       1301 TATTGGTAGTTTATATGCAATACTGGTGGTTTGACCACAA
          1 TACTGGCAGTTTATCTGCAATACTGGTGGCTTGTCCACAA

                  
       1341 TACTGG
          1 TACTGG

       1347 TAGATTATTT


Statistics
Matches: 107,  Mismatches: 19, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  40  107  1.00

ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Consensus pattern (40 bp):   
TACTGGCAGTTTATCTGCAATACTGGTGGCTTGTCCACAA
Done.