Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01783.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4090
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33


Found at i:3394 original size:6 final size:6

Alignment explanation


    Indices: 3385--3413  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       3375 AGACCGTGAG

                                             
       3385 AGGGAC AGGGAC AGGGAC AGGGAC AGGGA
          1 AGGGAC AGGGAC AGGGAC AGGGAC AGGGA

       3414 TTATGATGCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.34, C:0.14, G:0.52, T:0.00


Consensus pattern (6 bp):   
AGGGAC

Done.