Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01794.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 549

Length: 916
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34


Found at i:39 original size:26 final size:26

Alignment explanation


    Indices: 1--110  Score: 184
    Period size: 26  Copynumber: 4.2  Consensus size: 26

                                      
          1 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

             *     **              *  
         27 TAATAATACGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
         53 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
         79 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        105 TGATAA
          1 TGATAA

        111 GAATATCATG


Statistics
Matches: 76,  Mismatches: 8, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  26   76  1.00

ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.