Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01813.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3785
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31


Found at i:1448 original size:17 final size:18

Alignment explanation


    Indices: 1423--1458  Score: 56
    Period size: 17  Copynumber: 2.1  Consensus size: 18

       1413 TACCCTCAAA

                *             
       1423 ATAATATAATT-TATTTT
          1 ATAAAATAATTGTATTTT

                              
       1440 ATAAAATAATTGTATTTT
          1 ATAAAATAATTGTATTTT

             
       1458 A
          1 A

       1459 ATCATTATTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17   10  0.59
  18    7  0.41

ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53


Consensus pattern (18 bp):   
ATAAAATAATTGTATTTT
Done.