Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01846.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2227
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36


Found at i:1477 original size:12 final size:11

Alignment explanation


    Indices: 1458--1489  Score: 55
    Period size: 11  Copynumber: 2.8  Consensus size: 11

       1448 TGTTAGTTAA

                       
       1458 TCTTTTTTTTT
          1 TCTTTTTTTTT

                       
       1469 TCTTTTTTTTT
          1 TCTTTTTTTTT

                      
       1480 TCGTTTTTTT
          1 TC-TTTTTTT

       1490 AAATTGTAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11   13  0.65
  12    7  0.35

ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88


Consensus pattern (11 bp):   
TCTTTTTTTTT
Done.