Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01846.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1709
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39


Found at i:1477 original size:12 final size:11

Alignment explanation


    Indices: 1458--1489  Score: 55
    Period size: 11  Copynumber: 2.8  Consensus size: 11

       1448 TGTTAGTTAA

                       
       1458 TCTTTTTTTTT
          1 TCTTTTTTTTT

                       
       1469 TCTTTTTTTTT
          1 TCTTTTTTTTT

                      
       1480 TCGTTTTTTT
          1 TC-TTTTTTT

       1490 AAATTGTAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11   13  0.65
  12    7  0.35

ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88


Consensus pattern (11 bp):   
TCTTTTTTTTT

Found at i:1669 original size:16 final size:16

Alignment explanation


    Indices: 1644--1678  Score: 61
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1634 AATTTCATTT

                 *          
       1644 TATGTGTGAATGCCTA
          1 TATGTATGAATGCCTA

                            
       1660 TATGTATGAATGCCTA
          1 TATGTATGAATGCCTA

               
       1676 TAT
          1 TAT

       1679 CTATCTTTTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40


Consensus pattern (16 bp):   
TATGTATGAATGCCTA
Done.