Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01865.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31


Found at i:668 original size:21 final size:21

Alignment explanation


    Indices: 642--688  Score: 94
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        632 GTCCATCGAT

                                 
        642 TGTTAGTTCTCTTGAAACTTC
          1 TGTTAGTTCTCTTGAAACTTC

                                 
        663 TGTTAGTTCTCTTGAAACTTC
          1 TGTTAGTTCTCTTGAAACTTC

                 
        684 TGTTA
          1 TGTTA

        689 CATCCCTTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49


Consensus pattern (21 bp):   
TGTTAGTTCTCTTGAAACTTC
Done.