Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01868.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1212
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34


Found at i:328 original size:20 final size:21

Alignment explanation


    Indices: 262--330  Score: 95
    Period size: 21  Copynumber: 3.3  Consensus size: 21

        252 TCACTTCGTT

                                 
        262 TCTTTTTGTCCAAGTTACTTC
          1 TCTTTTTGTCCAAGTTACTTC

                            *    
        283 TCTTTTTGTCCAAGTTGCTTC
          1 TCTTTTTGTCCAAGTTACTTC

                      *  * *     
        304 TCTTTTTGTCTAACTCACTTC
          1 TCTTTTTGTCCAAGTTACTTC

                   
        325 -CTTTTT
          1 TCTTTTT

        331 TCTTTGTGAG


Statistics
Matches: 43,  Mismatches: 5, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  20    6  0.14
  21   37  0.86

ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55


Consensus pattern (21 bp):   
TCTTTTTGTCCAAGTTACTTC
Done.