Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01871.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4560
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28


Found at i:494 original size:13 final size:15

Alignment explanation


    Indices: 469--508  Score: 66
    Period size: 13  Copynumber: 2.8  Consensus size: 15

        459 TATTTTATTA

                           
        469 AATAAATATTAAATT
          1 AATAAATATTAAATT

                           
        484 AA-AAA-ATTAAATT
          1 AATAAATATTAAATT

                        
        497 AATAAATATTAA
          1 AATAAATATTAA

        509 TAAATTAAGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  13   10  0.43
  14    6  0.26
  15    7  0.30

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (15 bp):   
AATAAATATTAAATT
Done.