Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00005.P5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3029
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:2342 original size:78 final size:78

Alignment explanation


    Indices: 2196--2344  Score: 228
    Period size: 78  Copynumber: 1.9  Consensus size: 78

       2186 CTCATATTCT

                                              *                         *  * 
       2196 ACCATTAAACCATGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGACC

                         
       2261 ACCATGGAGTTCG
         66 ACCATGGAGTTCG

                       *                               *                *    
       2274 ACCATTAAACCCTGATCCCTTGATCTCATCC-GCTAGGAGAGTTGGTGATCATGTTGATAGCGAC
          1 ACCATTAAACCATGATCCCTTGATCTCA-CCAGCTAGGAGAGTCGGTGATCATGTTGATAACGAC

                   
       2338 CACCATG
         65 CACCATG

       2345 ACGTTGTGCA


Statistics
Matches: 64,  Mismatches: 6, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  78   62  0.97
  79    2  0.03

ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27


Consensus pattern (78 bp):   
ACCATTAAACCATGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGACC
ACCATGGAGTTCG
Done.