Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00006.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4834
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:3362 original size:71 final size:71

Alignment explanation


    Indices: 3273--3415  Score: 259
    Period size: 71  Copynumber: 2.0  Consensus size: 71

       3263 CTGGCAAGGT

                                                                 *      *    
       3273 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTAATCTTGTCTTATGCCCTGTGA
          1 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTAATCTTGTCTAATGCCCCGTGA

                  
       3338 ATACCA
         66 ATACCA

                                                        *                    
       3344 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTATTCTTGTCTAATGCCCCGTGA
          1 TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTAATCTTGTCTAATGCCCCGTGA

                  
       3409 ATACCA
         66 ATACCA

             
       3415 T
          1 T

       3416 CATATTTTAG


Statistics
Matches: 69,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  71   69  1.00

ACGTcount: A:0.27, C:0.26, G:0.07, T:0.41


Consensus pattern (71 bp):   
TGACCATTTACCTTTCTATTCCACCTAAATCTAAATCATTTTTAATCTTGTCTAATGCCCCGTGA
ATACCA
Done.