Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01887.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2484
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:1654 original size:43 final size:43

Alignment explanation


    Indices: 1593--1679  Score: 174
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       1583 CTATATTGAC

                                                       
       1593 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
          1 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT

                                                       
       1636 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
          1 TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT

             
       1679 T
          1 T

       1680 CTCTTATTTT


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   44  1.00

ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36


Consensus pattern (43 bp):   
TGTTTTCCCCCACAAAATGCGGCCGGTATATGTCTCAATTTGT
Done.