Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01896.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:484 original size:16 final size:16

Alignment explanation


    Indices: 460--500  Score: 57
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        450 CAAAAATTGT

                         *  
        460 AAAAA-TGACCCATAA
          1 AAAAATTGACCCACAA

                            
        475 AAAAATTGACCCACAA
          1 AAAAATTGACCCACAA

                *     
        491 AAAATTTGAC
          1 AAAAATTGAC

        501 TCACCGAAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15    5  0.22
  16   18  0.78

ACGTcount: A:0.56, C:0.20, G:0.07, T:0.17


Consensus pattern (16 bp):   
AAAAATTGACCCACAA
Done.