Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01901.F13

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2046
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31


Found at i:1149 original size:24 final size:24

Alignment explanation


    Indices: 1118--1165  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1108 CTGTGGATGG

                                    
       1118 TTTTGACATATAGATATCAAGGCT
          1 TTTTGACATATAGATATCAAGGCT

                              *     
       1142 TTTTGACATATAGATATCCAGGCT
          1 TTTTGACATATAGATATCAAGGCT

       1166 GCAAACCTTG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38


Consensus pattern (24 bp):   
TTTTGACATATAGATATCAAGGCT
Done.