Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01901.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2733
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34


Found at i:1059 original size:24 final size:24

Alignment explanation


    Indices: 1028--1075  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1018 CTGTGGATGG

                                    
       1028 TTTTGACATATAGATATCAAGGCT
          1 TTTTGACATATAGATATCAAGGCT

                              *     
       1052 TTTTGACATATAGATATCCAGGCT
          1 TTTTGACATATAGATATCAAGGCT

       1076 GCAAACCTTG


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38


Consensus pattern (24 bp):   
TTTTGACATATAGATATCAAGGCT

Found at i:1581 original size:12 final size:12

Alignment explanation


    Indices: 1564--1588  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1554 TCTGACTTAA

                        
       1564 TAAAATGACAAC
          1 TAAAATGACAAC

                        
       1576 TAAAATGACAAC
          1 TAAAATGACAAC

             
       1588 T
          1 T

       1589 CCATGATGCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20


Consensus pattern (12 bp):   
TAAAATGACAAC
Done.