Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01914.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4048
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:1933 original size:32 final size:32

Alignment explanation


    Indices: 1887--1951  Score: 121
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1877 AATGTACTGA

                                            
       1887 AAGAATTGGTTTTGATGTGGAACACTAGTCTT
          1 AAGAATTGGTTTTGATGTGGAACACTAGTCTT

                *                           
       1919 AAGAGTTGGTTTTGATGTGGAACACTAGTCTT
          1 AAGAATTGGTTTTGATGTGGAACACTAGTCTT

             
       1951 A
          1 A

       1952 GTTACTAGTC


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.28, C:0.09, G:0.26, T:0.37


Consensus pattern (32 bp):   
AAGAATTGGTTTTGATGTGGAACACTAGTCTT
Done.