Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01929.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5486
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.29


Found at i:3857 original size:31 final size:31

Alignment explanation


    Indices: 3819--3882  Score: 128
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       3809 TGTTGGCTTC

                                           
       3819 GGGGCTACGATGGCAGGTAGGAAATGGAACA
          1 GGGGCTACGATGGCAGGTAGGAAATGGAACA

                                           
       3850 GGGGCTACGATGGCAGGTAGGAAATGGAACA
          1 GGGGCTACGATGGCAGGTAGGAAATGGAACA

              
       3881 GG
          1 GG

       3883 CATTTCGATT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.31, C:0.12, G:0.44, T:0.12


Consensus pattern (31 bp):   
GGGGCTACGATGGCAGGTAGGAAATGGAACA
Done.