Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01930.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 531

Length: 886
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32


Found at i:543 original size:31 final size:31

Alignment explanation


    Indices: 505--568  Score: 128
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        495 AATCGAAATG

                                           
        505 CCTGTTCCATTTCCTACCTGCCATCGTAGCC
          1 CCTGTTCCATTTCCTACCTGCCATCGTAGCC

                                           
        536 CCTGTTCCATTTCCTACCTGCCATCGTAGCC
          1 CCTGTTCCATTTCCTACCTGCCATCGTAGCC

              
        567 CC
          1 CC

        569 GAAGCCAACA


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.12, C:0.44, G:0.12, T:0.31


Consensus pattern (31 bp):   
CCTGTTCCATTTCCTACCTGCCATCGTAGCC
Done.