Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01935.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2116
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31


Found at i:25 original size:5 final size:5

Alignment explanation


    Indices: 17--54  Score: 58
    Period size: 5  Copynumber: 7.6  Consensus size: 5

          7 AGTAGTTCCA

                *     *                                  
         17 ACTCA ACTCA ACTCC ACTCC ACTCC ACTCC ACTCC ACT
          1 ACTCC ACTCC ACTCC ACTCC ACTCC ACTCC ACTCC ACT

         55 ACTCAAGTTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   5   32  1.00

ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21


Consensus pattern (5 bp):   
ACTCC

Done.