Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga10g01944.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5409
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34


Found at i:3062 original size:23 final size:23

Alignment explanation


    Indices: 3034--3080  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3024 AGAGTAATTG

                                   
       3034 AAGGAGAATGAAGAGTTAAAAGT
          1 AAGGAGAATGAAGAGTTAAAAGT

                                   
       3057 AAGGAGAATGAAGAGTTAAAAGT
          1 AAGGAGAATGAAGAGTTAAAAGT

             
       3080 A
          1 A

       3081 TACTTTTAGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.53, C:0.00, G:0.30, T:0.17


Consensus pattern (23 bp):   
AAGGAGAATGAAGAGTTAAAAGT
Done.